Legend of nucleobases | |
---|---|
Code | Nucleotide represented |
A | Adenine (A) |
C | Cytosine (C) |
G | Guanine (G) |
T | Thymine (T) |
N | A, C, G or T |
M | A or C |
R | A or G |
W | A or T |
Y | C or T |
S | C or G |
K | G or T |
H | A, C or T |
B | C, G or T |
V | A, C or G |
D | A, G or T |
This article contains a list of the most studied restriction enzymes whose names start with O to R inclusive. It contains approximately 130 enzymes. The following information is given:
- Enzyme: Accepted name of the molecule, according to the internationally adopted nomenclature[1][2], and bibliographical references. (Further reading: see the section "Nomenclature" in the article "Restriction enzyme".)
- PDB code: Code used to identify the structure of a protein in the PDB database of protein structures. The 3D atomic structure of a protein provides highly valuable information to understand the intimate details of its mechanism of action[3][4].
- Source: Organism that naturally produces the enzyme.
- Recognition sequence: Sequence of DNA recognized by the enzyme and to which it specifically binds.
- Cut: Cutting site and DNA products of the cut. The recognition sequence and the cutting site usually match, but sometimes the cutting site can be dozens of nucleotides away from the recognition site[5][6].
- Isoschizomers and neoschizomers: An isoschizomer is an enzyme that recognizes the same sequence as another. A neoschizomer is a special type of isoschizomer that recognizes the same sequence as another, but cuts in a different manner. A maximum number of 8-10 most common isoschizomers are indicated for every enzyme but there may be many more. Neoschizomers are shown in bold and green color font (e.g.: BamHI). When "None on date" is indicated, that means that there were no registered isoschizomers in the databases on that date with a clearly defined cutting site. Isoschizomers indicated in white font and grey background correspond to enzymes not listed in the current lists:
as in this not listed enzyme: EcoR70I
Whole list navigation
Restriction enzymes
O
Enzyme | PDB code | Source | Recognition sequence | Cut | Isoschizomers |
OfoI | Oscillatoria foreaui A-1340 | 5' CYCGRG 3' GRGCYC |
5' ---C YCGRG--- 3' 3' ---GRGCY C--- 5' |
AquI, AvaI, Bse15I, BspLU4I, Eco27kI, Nli3877I, PlaAI, PunAI | |
OkrAI | Oceanospirillum kriegii | 5' GGATCC 3' CCTAGG |
5' ---G GATCC--- 3' 3' ---CCTAG G--- 5' |
BamHI, Bce751I, BnaI, Bsp98I, BstI, OkrAI, SolI, Uba4009I | |
OliI | Oceanospirillum linum 4-5D | 5' CACN4GTG 3' GTGN4CAC |
5' ---CACNN NNGTG--- 3' 3' ---GTGNN NNCAC--- 5' |
AleI | |
OxaNI | Oerskovia xanthineolytica N | 5' CCTNAGG 3' GGANTCC |
5' ---CC TNAGG--- 3' 3' ---GGANT CC--- 5' |
AocI, BliHKI, BspR7I, CvnI, Lmu60I, OxaNI, SauI, SshAI |
P
Enzyme | PDB code | Source | Recognition sequence | Cut | Isoschizomers | ||||||
PabI | 2DVY | Pyrococcus abyssi | 5' GTAC 3' CATG |
5' ---GTA C--- 3' 3' ---C ATG--- 5' |
| ||||||
PacI | Pseudomonas alcaligenes | 5' TTAATTAA 3' AATTAATT |
5' ---TTAAT TAA--- 3' 3' ---AAT TAATT--- 5' |
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Pac25I | Pseudomonas alcaligenes | 5' CCCGGG 3' GGGCCC |
5' ---C CCGGG--- 3' 3' ---GGGCC C--- 5' |
AhyI, Cfr9I, EaeAI, EclRI, PspAI, PspALI, XcyI, XmaI, XmaCI | |||||||
PaeI | Pseudomonas aeruginosa | 5' GCATGC 3' CGTACG |
5' ---GCATG C--- 3' 3' ---C GTACG--- 5' |
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PaeAI | Pseudomonas aeruginosa | 5' CCGCGG 3' GGCGCC |
5' ---CCGC GG--- 3' 3' ---GG CGCC--- 5' |
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PaeBI | Pseudomonas aeruginosa - 18 | 5' CCCGGG 3' GGGCCC |
5' ---CCC GGG--- 3' 3' ---GGG CCC--- 5' |
AhyI, Cfr9I, EaeAI, EclRI, PspALI, SmaI, TspMI, XcyI, XmaI, XmaCI | |||||||
PaeHI | Pseudomonas aeruginosa 4148 | 5' GRGCYC 3' CYCGRG |
5' ---GRGCY C--- 3' 3' ---C YCGRG--- 5' |
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PaeHII | Pseudomonas aeruginosa 4148 | 5' CTGCAG 3' GACGTC |
5' ---CTGCA G--- 3' 3' ---G ACGTC--- 5' |
AliAJI, BspBI, BspMAI, CfuII, Ecl2zI, HalII, Srl5DI, Sst12I, XcpI | |||||||
PaeQI | Pseudomonas aeruginosa Q2 | 5' CCGCGG 3' GGCGCC |
5' ---CCGC GG--- 3' 3' ---GG CGCC--- 5' |
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PaeR7I | Pseudomonas aeruginosa PA0303 pMG7 | 5' CTCGAG 3' GAGCTC |
5' ---C TCGAG--- 3' 3' ---GAGCT C--- 5' |
AbrI, BluI, BssHI, MavI, Sau3239I, Sol10179I, StrI, TliI | |||||||
Pae2kI | Pseudomonas aeruginosa 2k | 5' AGATCT 3' TCTAGA |
5' ---A GATCT--- 3' 3' ---TCTAG A--- 5' |
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Pae5kI | Pseudomonas aeruginosa 5k | 5' CCGCGG 3' GGCGCC |
5' ---CCGC GG--- 3' 3' ---GG CGCC--- 5' |
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Pae14kI | Pseudomonas aeruginosa 14k | 5' CCGCGG 3' GGCGCC |
5' ---CCGC GG--- 3' 3' ---GG CGCC--- 5' |
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Pae17kI | Pseudomonas aeruginosa 17k | 5' CAGCTG 3' GTCGAC |
5' ---CAG CTG--- 3' 3' ---GTC GAC--- 5' |
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Pae18kI | Pseudomonas aeruginosa 18k | 5' AGATCT 3' TCTAGA |
5' ---A GATCT--- 3' 3' ---TCTAG A--- 5' |
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PagI | Pseudomonas alcaligenes Sau 14-027 | 5' TCATGA 3' AGTACT |
5' ---T CATGA--- 3' 3' ---AGTAC T--- 5' |
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PalI | Providencia alcalifaciens | 5' GGCC 3' CCGG |
5' ---GG CC--- 3' 3' ---CC GG--- 5' |
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PamI | Phormidium ambiguum | 5' TGCGCA 3' ACGCGT |
5' ---TGC GCA--- 3' 3' ---ACG CGT--- 5' |
Acc16I, AosI, AviII, FdiII, FspI, MstI, NsbI, Pun14627I | |||||||
PamII | Phormidium ambiguum | 5' GRCGYC 3' CYGCRG |
5' ---GR CGYC--- 3' 3' ---CYGC RG--- 5' |
AsuIII, BsaHI, BstACI, HgiDI, HgiGI, HgiHII, Hin1I, Hsp92I, Msp17I | |||||||
PanI | Pseudomonas alkanolytica | 5' CTCGAG 3' GAGCTC |
5' ---C TCGAG--- 3' 3' ---GAGCT C--- 5' |
BspAAI, BstVI, MlaAI, PaeR7I, Sbi68I, Sfr274I, SlaI, XpaI | |||||||
PasI | Pseudomonas anguilliseptica RFL1 | 5' CCCWGGG 3' GGGWCCC |
5' ---CC CWGGG--- 3' 3' ---GGGWC CC--- 5' |
— None on May 2010 — | |||||||
PauI | Paracoccus alcaliphilus ZVK3-3 | 5' GCGCGC 3' CGCGCG |
5' ---G CGCGC--- 3' 3' ---CGCGC G--- 5' |
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PauAI | Phormidium autumnale | 5' RCATGY 3' YGTACR |
5' ---RCATG Y--- 3' 3' ---Y GTACR--- 5' |
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PauAII | Phormidium autumnale | 5' TTTAAA 3' AAATTT |
5' ---TTT AAA--- 3' 3' ---AAA TTT--- 5' |
AhaIII, DraI, SruI | |||||||
PceI | Planococcus citreus 55 | 5' AGGCCT 3' TCCGGA |
5' ---AGG CCT--- 3' 3' ---TCC GGA--- 5' |
AatI, AspMI, GdiI, PceI, Pme55I, SarI, Sru30DI, SseBI, SteI, StuI | |||||||
PciI | Planococcus citreus SE-F45 | 5' ACATGT 3' TGTACA |
5' ---A CATGT--- 3' 3' ---TGTAC A--- 5' |
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PctI | Planococcus citreus SM | 5' GAATGC 3' CTTACG |
5' ---GAATGCN --- 3' 3' ---CTTAC GN--- 5' |
| |||||||
Pde12I | Paracoccus denitrificans 12 | 5' GGNCC 3' CCNGG |
5' ---G GNCC--- 3' 3' ---CCNG G--- 5' |
AvcI, Bal228I, Bce22I, Bsp1894I, Bsu54I, Cfr13I, NspIV, UnbI | |||||||
Pde133I | Paracoccus denitrificans 133 | 5' GGCC 3' CCGG |
5' ---GG CC--- 3' 3' ---CC GG--- 5' |
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Pde137I | Paracoccus denitrificans 137 | 5' CCGG 3' GGCC |
5' ---C CGG--- 3' 3' ---GGC C--- 5' |
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PdiI | Pseudomonas diminuta Mck 33-321 | 5' GCCGGC 3' CGGCCG |
5' ---GCC GGC--- 3' 3' ---CGG CCG--- 5' |
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PdmI | Pseudomonas diminuta Auk 5-324 | 5' GAAN4TTC 3' CTTN4AAG |
5' ---GAANN NNTTC--- 3' 3' ---CTTNN NNAAG--- 5' |
Asp700I, BbvAI, MroXI, XmnI | |||||||
PfaAI | Phormidium favosum | 5' GGYRCC 3' CCRYGG |
5' ---G GYRCC--- 3' 3' ---CCRYG G--- 5' |
AccB1I, BanI, BbvBI, BshNI, Eco64I, HgiCI, HgiHI, MspB4I | |||||||
PfaAII | Phormidium favosum | 5' CATATG 3' GTATAC |
5' ---CA TATG--- 3' 3' ---GTAT AC--- 5' |
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PfaAIII | Phormidium favosum | 5' GCATGC 3' CGTACG |
5' ---GCATG C--- 3' 3' ---C GTACG--- 5' |
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PfeI | Psychrobacter faecalis RFL1 | 5' GAWTC 3' CTWAG |
5' ---G AWTC--- 3' 3' ---CTWA G--- 5' |
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Pfl8I | Pseudomonas fluorescens 8 | 5' GGATCC 3' CCTAGG |
5' ---G GATCC--- 3' 3' ---CCTAG G--- 5' |
AliAJI, BspBI, BsuBI, CflI, CfrA4I, PaePI, Pfl21I, PstI, SflII, Sst12I | |||||||
Pfl21I | Pseudomonas sp. 21 | 5' CTGCAG 3' GACGTC |
5' ---CTGCA G--- 3' 3' ---G ACGTC--- 5' |
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Pfl23II | Pseudomonas fluorescens RFL23 | 5' CGTACG 3' GCATGC |
5' ---C GTACG--- 3' 3' ---GCATG C--- 5' |
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Pfl27I | Pseudomonas fluorescens RFL27 | 5' RGGWCCY 3' YCCWGGR |
5' ---RG GWCCY--- 3' 3' ---YCCWG GR--- 5' |
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PflBI | Pseudomonas fluorescens type B | 5' CCAN5TGG 3' GGTN5ACC |
5' ---CCANNNN NTGG--- 3' 3' ---GGTN NNNNACC--- 5' |
AccB7I, AcpII, Asp10HII, BasI, Esp1396I, PflMI, Van91I | |||||||
PflFI | Pseudomonas fluorescens biotype F | 5' GACNNNGTC 3' CTGNNNCAG |
5' ---GACN NNGTC--- 3' 3' ---CTGNN NCAG--- 5' |
AspI, AtsI, PsyI, TelI, Tth111I | |||||||
PflKI | Pseudomonas fluorescens | 5' GGCC 3' CCGG |
5' ---GG CC--- 3' 3' ---CC GG--- 5' |
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PflMI | Pseudomonas fluorescens | 5' CCAN5TGG 3' GGTN5ACC |
5' ---CCANNNN NTGG--- 3' 3' ---GGTN NNNNACC--- 5' |
AccB7I, AcpII, Asp10HII, BasI, Esp1396I, PflBI, Van91I | |||||||
PfoI | Pseudomonas fluorescens biovar 126 | 5' TCCNGGA 3' AGGNCCT |
5' ---T CCNGGA--- 3' 3' ---AGGNCC T--- 5' |
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PgaI | Pseudomonas gladioli B4 | 5' ATCGAT 3' TAGCTA |
5' ---AT CGAT--- 3' 3' ---TAGC TA--- 5' |
BanIII, BbvAII, BliAI, BscI, BspJI, BstNZ169I, ClaI, LcaI, Ssp27144I | |||||||
PhaI | Pasteurella haemolytica | 5' GCATC 3' CGTAG |
5' ---GCATCN4N NNNN--- 3' 3' ---CGTAGN4NNNNN --- 5' |
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PhoI | Pyrococcus horikoshii OT3 | 5' GGCC 3' CCGG |
5' ---GG CC--- 3' 3' ---CC GG--- 5' |
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PinAI | Pseudomonas inequalis | 5' ACCGGT 3' TGGCCA |
5' ---A CCGGT--- 3' 3' ---TGGCC A--- 5' |
| |||||||
PinBI | Phormidium inundatum | 5' ATGCAT 3' TACGTA |
5' ---ATGCA T--- 3' 3' ---T ACGTA--- 5' |
EcoT22I, BfrBI, Mph1103I, NsiI, Ppu10I, SepI, SspD5II, Zsp2I | |||||||
PinBII | Phormidium inundatum | 5' TCCGGA 3' AGGCCT |
5' ---T CCGGA--- 3' 3' ---AGGCC T--- 5' |
Aor13HI, BlfI, Bsp13I, BspEI, Bsu23I, Kpn2I, PinBII, PtaI | |||||||
PlaI | Phormidium lapideum | 5' GGCC 3' CCGG |
5' ---GG CC--- 3' 3' ---CC GG--- 5' |
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PlaII | Phormidium lapideum | 5' TTCGAA 3' AAGCTT |
5' ---TT CGAA--- 3' 3' ---AAGC TT--- 5' |
Asp10HI, BimI, Bsp119I, BstBI, Csp68KII, MlaI, SfuI, SspRFI | |||||||
PlaAI | Phormidium laminosum | 5' CYCGRG 3' GRGCYC |
5' ---C YCGRG--- 3' 3' ---GRGCY C--- 5' |
AquI, BcoI, Bse15I, BspLU4I, Eco27kI, Nli3877I, OfoI, PunAI | |||||||
PlaAII | Phormidium laminosum | 5' GTAC 3' CATG |
5' ---GT AC--- 3' 3' ---CA TG--- 5' |
| |||||||
PleI | Pseudomonas lemoignei | 5' GAGTC 3' CTCAG |
5' ---GAGTCNNNN N--- 3' 3' ---CTCAGNNNNN --- 5' |
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Ple19I | Pseudomonas lemoignei 19 | 5' CGATCG 3' GCTAGC |
5' ---CGAT CG--- 3' 3' ---GC TAGC--- 5' |
Afa22MI, BspCI, ErhB9I, MvrI, Psu161I, PvuI, RshI, XorII | |||||||
PmaCI | Pseudomonas maltophilia CB50P | 5' CACGTG 3' GTGCAC |
5' ---CAC GTG--- 3' 3' ---GTG CAC--- 5' |
AcvI, BcoAI, BbrPI, Eco72I, PmlI, PspCI | |||||||
PmeI | Pseudomonas mendocina | 5' GTTTAAAC 3' CAAATTTG |
5' ---GTTT AAAC--- 3' 3' ---CAAA TTTG--- 5' |
MssI | |||||||
Pme55I | Pseudomonas mendocina 55 | 5' AGGCCT 3' TCCGGA |
5' ---AGG CCT--- 3' 3' ---TCC GGA--- 5' |
AatI, AspMI, Eco147I, GdiI, PceI, SarI, Sru30DI, SseBI, SteI, StuI | |||||||
PmlI | Pseudomonas maltophilia | 5' CACGTG 3' GTGCAC |
5' ---CAC GTG--- 3' 3' ---GTG CAC--- 5' |
AcvI, BcoAI, BbrPI, Eco72I, PmaCI, PspCI | |||||||
PovII | Proteus vulgaris | 5' CAGCTG 3' GTCGAC |
5' ---CAG CTG--- 3' 3' ---GTC GAC--- 5' |
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PpaAI | Phormidium papyraceum | 5' TTCGAA 3' AAGCTT |
5' ---TT CGAA--- 3' 3' ---AAGC TT--- 5' |
AsuII, BimI, Bsp119I, CbiI, Csp68KII, SfuI, SspRFI, SviI | |||||||
PpaAII | Phormidium papyraceum | 5' TCGA 3' AGCT |
5' ---T CGA--- 3' 3' ---AGC T--- 5' |
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PpeI | Phormidium persicinum | 5' GGGCCC 3' CCCGGG |
5' ---GGGCC C--- 3' 3' ---C CCGGG--- 5' |
ApaI, Bsp120I, PspOMI | |||||||
PpiI | Pseudomonas putida Jo 4-731 | 5' GAACN5CTC 3' CTTGN5GAG |
5' ---GAACN5CTCN7NNNNNN --- 3' 3' ---CTTGN5GAGN7N NNNNN--- 5' |
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PpsI | Pseudomonas pseudoalcaligenes PL | 5' GAGTC 3' CTCAG |
5' ---GAGTCNNNN N--- 3' 3' ---CTCAGNNNNN --- 5' |
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Ppu10I | Pseudomonas putida RFL10 | 5' ATGCAT 3' TACGTA |
5' ---A TGCAT--- 3' 3' ---TACGT A--- 5' |
BfrBI, Csp68KII, EcoT22I, Mph1103I, NsiI, SepI, SspD5II | |||||||
Ppu111I | Pseudomonas putida P111 | 5' GAATTC 3' CTTAAG |
5' ---G AATTC--- 3' 3' ---CTTAA G--- 5' |
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PpuAI | Pseudomonas putida A1 | 5' CGTACG 3' GCATGC |
5' ---C GTACG--- 3' 3' ---GCATG C--- 5' |
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PpuMI | Pseudomonas putida M | 5' RGGWCCY 3' YCCWGGR |
5' ---RG GWCCY--- 3' 3' ---YCCWG GR--- 5' |
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PpuXI | Pseudomonas putida X | 5' RGGWCCY 3' YCCWGGR |
5' ---RG GWCCY--- 3' 3' ---YCCWG GR--- 5' |
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PshAI | Plesiomonas shigelloides 319-73 | 5' GACN4GTC 3' CTGN4CAG |
5' ---GACNN NNGTC--- 3' 3' ---CTGNN NNCAG--- 5' |
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PshBI | Plesiomonas shigelloides TPS970 | 5' ATTAAT 3' TAATTA |
5' ---AT TAAT--- 3' 3' ---TAAT TA--- 5' |
AseI, AsnI, BpoAI, Sru4DI, VspI | |||||||
PsiI | Pseudomonas sp. SE-G49 | 5' TTATAA 3' AATATT |
5' ---TTA TAA--- 3' 3' ---AAT ATT--- 5' |
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Psp03I | Phormidium sp. | 5' GGWCC 3' CCWGG |
5' ---GGWC C--- 3' 3' ---C CWGG--- 5' |
Bme216I, CauI, EagMI, FdiI, HgiBI, HgiHIII, SinI, VpaK11AI | |||||||
Psp5II | Pseudomonas sp. RFL5 | 5' RGGWCCY 3' YCCWGGR |
5' ---RG GWCCY--- 3' 3' ---YCCWG GR--- 5' |
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Psp6I | Pseudomonas sp. B6 | 5' CCWGG 3' GGWCC |
5' --- CCWGG--- 3' 3' ---GGWCC --- 5' |
AeuI, AglI, ApaORI, Bse17I, EcoRII, Fsp1604I, SspAI, Sth117I | |||||||
Psp23I | Pseudomonas sp. 23 | 5' CTGCAG 3' GACGTC |
5' ---CTGCA G--- 3' 3' ---G ACGTC--- 5' |
ApiI, BspBI, CflI, MhaAI, Pfl21I, PstI, SalPI, Sst12I, YenI | |||||||
Psp1406I | Pseudomonas pseudoalcaligenes RFL1406 | 5' AACGTT 3' TTGCAA |
5' ---AA CGTT--- 3' 3' ---TTGC AA--- 5' |
AclI | |||||||
PspAI | Pseudomonas sp. | 5' CCCGGG 3' GGGCCC |
5' ---C CCGGG--- 3' 3' ---GGGCC C--- 5' |
AhyI, CfrJ4I, EaeAI, EclRI, Pac25I, SmaI, TspMI, XcyI, XmaI, XmaCI | |||||||
PspALI | Pseudomonas sp. AL1637 | 5' CCCGGG 3' GGGCCC |
5' ---CCC GGG--- 3' 3' ---GGG CCC--- 5' |
AhyI, Cfr9I, EaeAI, EclRI, PspALI, SmaI, TspMI, XcyI, XmaI, XmaCI | |||||||
Psp124BI | Pseudomonas sp. 124B | 5' GAGCTC 3' CTCGAG |
5' ---GAGCT C--- 3' 3' ---C TCGAG--- 5' |
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PspCI | Pseudomonas sp. C | 5' CACGTG 3' GTGCAC |
5' ---CAC GTG--- 3' 3' ---GTG CAC--- 5' |
AcvI, BcoAI, BbrPI, Eco72I, PmaCI, PmlI | |||||||
PspEI | Pseudomonas sp. E | 5' GGTNACC 3' CCANTGG |
5' ---G GTNACC--- 3' 3' ---CCANTG G--- 5' |
AcrII, AspAI, BstEII, BstPI, Eci125I, Eco91I, EcoO65I, EcoO128I | |||||||
PspGI | 3BM3 | Pyrococcus sp. GI-H | 5' CCWGG 3' GGWCC |
5' --- CCWGG--- 3' 3' ---GGWCC --- 5' |
AeuI, AjnI, AorI, Bse17I, EcoRII, Fsp1604I, Psp6I, SspAI, Sth117I | ||||||
PspLI | Pseudomonas sp. L | 5' CGTACG 3' GCATGC |
5' ---C GTACG--- 3' 3' ---GCATG C--- 5' |
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PspN4I | Pseudomonas sp. N4 | 5' GGNNCC 3' CCNNGG |
5' ---GGN NCC--- 3' 3' ---CCN NGG--- 5' |
| |||||||
PspOMI | Pseudomonas sp. OM2164 | 5' GGGCCC 3' CCCGGG |
5' ---G GGCCC--- 3' 3' ---CCCGG G--- 5' |
ApaI, Bsp120I, PpeI | |||||||
PspPI | Psychrobacter immobilis TA137 | 5' GGNCC 3' CCNGG |
5' ---G GNCC--- 3' 3' ---CCNG G--- 5' |
AsuI, Bal228I, BavBII, BsiZI, BspF4I, Cfr13I, Nsp7121I, Sau96I | |||||||
PspPPI | Pseudomonas sp. PP | 5' RGGWCCY 3' YCCWGGR |
5' ---RG GWCCY--- 3' 3' ---YCCWG GR--- 5' |
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PspXI | Pseudomonas sp. A1-1 | 5' VCTCGAGB 3' BGAGCTCV |
5' ---VC TCGAGB--- 3' 3' ---BGAGCT CV--- 5' |
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PsrI | Pseudomonas stutzeri N2 | 5' GAACN6TAC 3' CTTGN6ATG |
5' ---GAACN6TACN6NNNNNN --- 3' 3' ---CTTGN6ATGN6N NNNNN--- 5' |
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PssI | Pseudomonas sp. | 5' RGGNCCY 3' YCCNGGR |
5' ---RGGNC CY--- 3' 3' ---YC CNGGR--- 5' |
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PstI[7] | Providencia stuartii 164 | 5' CTGCAG 3' GACGTC |
5' ---CTGCA G--- 3' 3' ---G ACGTC--- 5' |
AliAJI, BspBI, CfuII, Ecl2zI, HalII, PstI, Sag16I, Sag23I, Sst12I, XcpI | |||||||
PstNHI | Pseudomonas stutzeri NH | 5' GCTAGC 3' CGATCG |
5' ---G CTAGC--- 3' 3' ---CGATC G--- 5' |
| |||||||
PsuI | Pseudomonas stutzeri Mck 28-pH52 | 5' RGATCY 3' YCTAGR |
5' ---R GATCY--- 3' 3' ---YCTAG R--- 5' |
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Psu161I | Pseudomonas stutzeri 161 | 5' CGATCG 3' GCTAGC |
5' ---CGAT CG--- 3' 3' ---GC TAGC--- 5' |
Afa16RI, BspCI, EagBI, MvrI, Ple19I, PvuI, RshI, XorII | |||||||
PsuAI | Phormidium subfuscum | 5' YACGTR 3' RTGCAY |
5' ---YAC GTR--- 3' 3' ---RTG CAY--- 5' |
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PsyI | Pseudomonas syringae Lki 1-pH124 | 5' GACNNNGTC 3' CTGNNNCAG |
5' ---GACN NNGTC--- 3' 3' ---CTGNN NCAG--- 5' |
AspI, AtsI, PflFI, TelI, Tth111I | |||||||
PtaI | Phormidium tadzschicicum | 5' TCCGGA 3' AGGCCT |
5' ---T CCGGA--- 3' 3' ---AGGCC T--- 5' |
Aor13HI, BlfI, BseAI, Bsp13I, BspEI, Kpn2I, PinBII, PtaI | |||||||
Pun14627I | Phormidium uncinatum 1462/7 | 5' TGCGCA 3' ACGCGT |
5' ---TGC GCA--- 3' 3' ---ACG CGT--- 5' |
Acc16I, AosI, AviII, FdiII, FspI, MstI, NsbI, PamI | |||||||
Pun14627II | Phormidium uncinatum 1462/7 | 5' CAGCTG 3' GTCGAC |
5' ---CAG CTG--- 3' 3' ---GTC GAC--- 5' |
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PunAI | Phormidium uncinatum | 5' CYCGRG 3' GRGCYC |
5' ---C YCGRG--- 3' 3' ---GRGCY C--- 5' |
AquI, BcoI, BsiHKCI, BspLU4I, Eco27kI, Nli3877I, PlaAI | |||||||
PunAII | Phormidium uncinatum | 5' RCATGY 3' YGTACR |
5' ---RCATG Y--- 3' 3' ---Y GTACR--- 5' |
||||||||
PvuI | Proteus vulgaris | 5' CGATCG 3' GCTAGC |
5' ---CGAT CG--- 3' 3' ---GC TAGC--- 5' |
Afa22MI, BspCI, ErhB9I, NblI, Ple19I, Psu161I, RshI, XorII | |||||||
PvuII | 1PVU | Proteus vulgaris | 5' CAGCTG 3' GTCGAC |
5' ---CAG CTG--- 3' 3' ---GTC GAC--- 5' |
|||||||
Pvu84II | Proteus vulgaris 84 | 5' CAGCTG 3' GTCGAC |
5' ---CAG CTG--- 3' 3' ---GTC GAC--- 5' |
R
Enzyme | PDB code | Source | Recognition sequence | Cut | Isoschizomers | ||||
RalF40I | Ruminococcus albus F-40 | 5' GATC 3' CTAG |
5' --- GATC--- 3' 3' ---CTAG --- 5' |
BscFI, BspAI, BstENII, ChaI, HacI, MkrAI, Sau3AI, SsiAI | |||||
RcaI | Rhodococcus capsulatum | 5' TCATGA 3' AGTACT |
5' ---T CATGA--- 3' 3' ---AGTAC T--- 5' |
||||||
RflFI | Ruminococcus flavefaciens FD-1 | 5' GTCGAC 3' CAGCTG |
5' ---G TCGAC--- 3' 3' ---CAGCT G--- 5' |
||||||
RflFII | Ruminococcus flavefaciens FD-1 | 5' AGTACT 3' TCATGA |
5' ---AGT ACT--- 3' 3' ---TCA TGA--- 5' |
| |||||
RleAI | Rhizobium leguminosarum | 5' CCCACA 3' GGGTGT |
5' ---CCCACAN8NNNN --- 3' 3' ---GGGTGTN8N NNN--- 5' |
||||||
RmaI | Rhodothermus marinus | 5' CTAG 3' GATC |
5' ---C TAG--- 3' 3' ---GAT C--- 5' |
||||||
Rme21I | Rhizobium meliloti | 5' ATCGAT 3' TAGCTA |
5' ---AT CGAT--- 3' 3' ---TAGC TA--- 5' |
BanIII, BbvAII, BliRI, BscI, BspJI, BstNZ169I, ClaI, LcaI, Ssp27144I | |||||
RsaI | Rhodopseudomonas sphaeroides | 5' GTAC 3' CATG |
5' ---GT AC--- 3' 3' ---CA TG--- 5' |
| |||||
RshI | Rhodopseudomonas sphaeroides 2.4.1 | 5' CGATCG 3' GCTAGC |
5' ---CGAT CG--- 3' 3' ---GC TAGC--- 5' |
Afa16RI, BspCI, EagBI, MvrI, Ple19I, Psu161I, PvuI, XorII | |||||
RspLKI | Rhodococcus sp. LK2 | 5' GCATGC 3' CGTACG |
5' ---GCATG C--- 3' 3' ---C GTACG--- 5' |
||||||
RspLKII | Rhodococcus sp. LK2 | 5' GGATCC 3' CCTAGG |
5' ---G GATCC--- 3' 3' ---CCTAG G--- 5' |
AliI, AsiI, BamHI, Bce751I, Nsp29132II, OkrAI, RspLKII, SolI | |||||
RspXI | Rhodococcus sp. | 5' TCATGA 3' AGTACT |
5' ---T CATGA--- 3' 3' ---AGTAC T--- 5' |
||||||
RsrI | Rhodopseudomonas sphaeroides | 5' GAATTC 3' CTTAAG |
5' ---G AATTC--- 3' 3' ---CTTAA G--- 5' |
||||||
RsrII | Rhodopseudomonas sphaeroides | 5' CGGWCCG 3' GCCWGGC |
5' ---CG GWCCG--- 3' 3' ---GCCWG GC--- 5' |
||||||
Rsr2I | Rhodobacter sphaeroides SE-I2 | 5' CGGWCCG 3' GCCWGGC |
5' ---CG GWCCG--- 3' 3' ---GCCWG GC--- 5' |
||||||
RtrI | Rhizobium trifolii | 5' GTCGAC 3' CAGCTG |
5' ---G TCGAC--- 3' 3' ---CAGCT G--- 5' |
||||||
Rtr63I | Rhizobium trifolii 63 | 5' GTCGAC 3' CAGCTG |
5' ---G TCGAC--- 3' 3' ---CAGCT G--- 5' |
Notes
- ↑ Smith HO, Nathans D (December 1973). "Letter: A suggested nomenclature for bacterial host modification and restriction systems and their enzymes". J. Mol. Biol. 81 (3): 419–23. doi:10.1016/0022-2836(73)90152-6. PMID 4588280.
- ↑ Roberts RJ, Belfort M, Bestor T, Bhagwat AS, Bickle TA, Bitinaite J, Blumenthal RM, Degtyarev SK, Dryden DT, Dybvig K, Firman K, Gromova ES, Gumport RI, Halford SE, Hattman S, Heitman J, Hornby DP, Janulaitis A, Jeltsch A, Josephsen J, Kiss A, Klaenhammer TR, Kobayashi I, Kong H, Krüger DH, Lacks S, Marinus MG, Miyahara M, Morgan RD, Murray NE, Nagaraja V, Piekarowicz A, Pingoud A, Raleigh E, Rao DN, Reich N, Repin VE, Selker EU, Shaw PC, Stein DC, Stoddard BL, Szybalski W, Trautner TA, Van Etten JL, Vitor JM, Wilson GG, Xu SY (April 2003). "A nomenclature for restriction enzymes, DNA methyltransferases, homing endonucleases and their genes". Nucleic Acids Res. 31 (7): 1805–12. doi:10.1093/nar/gkg274. PMC 152790. PMID 12654995.
- ↑ Jeremy MB, John LT, Lubert S (2002). "3. Protein Structure and Function". Biochemistry. San Francisco: W. H. Freeman. ISBN 0-7167-4684-0.
- ↑ Anfinsen C.B. (1973). "Principles that Govern the Folding of Protein Chains". Science. 181 (4096): 223–30. doi:10.1126/science.181.4096.223. PMID 4124164.
- ↑ Kessler C, Manta V (August 1990). "Specificity of restriction endonucleases and DNA modification methyltransferases a review (Edition 3)". Gene. 92 (1–2): 1–248. doi:10.1016/0378-1119(90)90486-B. PMID 2172084.
- ↑ Pingoud A, Jeltsch A (September 2001). "Structure and function of type II restriction endonucleases". Nucleic Acids Res. 29 (18): 3705–27. doi:10.1093/nar/29.18.3705. PMC 55916. PMID 11557805.
- ↑ Monty Krieger; Matthew P Scott; Matsudaira, Paul T.; Lodish, Harvey F.; Darnell, James E.; Lawrence Zipursky; Kaiser, Chris; Arnold Berk (2004). Molecular Cell Biology (5th ed.). New York: W.H. Freeman and Company. ISBN 0-7167-4366-3.
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